From 71f7370ea98bbc1f5146d576fc8b3daada0f224b Mon Sep 17 00:00:00 2001 From: Kaleb S. KEITHLEY Date: Sep 09 2021 15:34:41 +0000 Subject: first build for c9s --- diff --git a/.hdf5.metadata b/.hdf5.metadata new file mode 100644 index 0000000..4aa9591 --- /dev/null +++ b/.hdf5.metadata @@ -0,0 +1,2 @@ +125b2dacb4fdac33f7bfbc7dfdeeb000ff68466b SOURCES/hdf5-1.10.7.tar.bz2 +655338820701a55ae62d49585923db28717805fc SOURCES/hdf5_1.10.6+repack-2.debian.tar.xz diff --git a/SOURCES/h5comp b/SOURCES/h5comp new file mode 100644 index 0000000..f685f43 --- /dev/null +++ b/SOURCES/h5comp @@ -0,0 +1,10 @@ +#!/bin/bash + +ARCH=$(uname -m) + +case $ARCH in + x86_64 | ppc64 | ia64 | s390x ) BITS=64;; + * ) BITS=32;; +esac + +exec $0-${BITS} "$@" diff --git a/SOURCES/hdf5-LD_LIBRARY_PATH.patch b/SOURCES/hdf5-LD_LIBRARY_PATH.patch new file mode 100644 index 0000000..7d01278 --- /dev/null +++ b/SOURCES/hdf5-LD_LIBRARY_PATH.patch @@ -0,0 +1,21 @@ +diff -up hdf5-1.8.13/src/Makefile.am.LD_LIBRARY_PATH hdf5-1.8.13/src/Makefile.am +--- hdf5-1.8.13/src/Makefile.am.LD_LIBRARY_PATH 2014-05-05 20:13:01.000000000 -0600 ++++ hdf5-1.8.13/src/Makefile.am 2014-05-15 09:53:59.569476295 -0600 +@@ -128,8 +128,6 @@ settings_DATA=libhdf5.settings + # Remove the generated .c file if errors occur unless HDF5_Make_Ignore + # is set to ignore the error. + H5Tinit.c: H5detect$(EXEEXT) +- LD_LIBRARY_PATH="$$LD_LIBRARY_PATH`echo $(LDFLAGS) | \ +- sed -e 's/-L/:/g' -e 's/ //g'`" \ + $(RUNSERIAL) ./H5detect$(EXEEXT) > $@ || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + ($(RM) $@ ; exit 1) +@@ -140,8 +138,6 @@ H5Tinit.c: H5detect$(EXEEXT) + # Remove the generated .c file if errors occur unless HDF5_Make_Ignore + # is set to ignore the error. + H5lib_settings.c: H5make_libsettings$(EXEEXT) libhdf5.settings +- LD_LIBRARY_PATH="$$LD_LIBRARY_PATH`echo $(LDFLAGS) | \ +- sed -e 's/-L/:/g' -e 's/ //g'`" \ + $(RUNSERIAL) ./H5make_libsettings$(EXEEXT) > $@ || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + ($(RM) $@ ; exit 1) diff --git a/SOURCES/hdf5-build.patch b/SOURCES/hdf5-build.patch new file mode 100644 index 0000000..66ba115 --- /dev/null +++ b/SOURCES/hdf5-build.patch @@ -0,0 +1,134 @@ +diff -up hdf5-1.10.7/java/examples/datasets/JavaDatasetExample.sh.in.build hdf5-1.10.7/java/examples/datasets/JavaDatasetExample.sh.in +--- hdf5-1.10.7/java/examples/datasets/JavaDatasetExample.sh.in.build 2020-08-27 21:38:23.000000000 -0600 ++++ hdf5-1.10.7/java/examples/datasets/JavaDatasetExample.sh.in 2020-10-07 20:27:26.540707493 -0600 +@@ -39,7 +39,7 @@ HDFLIB_HOME="$top_srcdir/java/lib" + BLDLIBDIR="$top_builddir/hdf5/lib" + BLDDIR="." + HDFTEST_HOME="$top_srcdir/java/examples/datasets" +-JARFILE=jar@PACKAGE_TARNAME@-@PACKAGE_VERSION@.jar ++JARFILE=@PACKAGE_TARNAME@.jar + TESTJARFILE=jar@PACKAGE_TARNAME@datasets.jar + test -d $BLDLIBDIR || mkdir -p $BLDLIBDIR + +diff -up hdf5-1.10.7/java/examples/datasets/Makefile.am.build hdf5-1.10.7/java/examples/datasets/Makefile.am +--- hdf5-1.10.7/java/examples/datasets/Makefile.am.build 2020-08-27 21:38:23.000000000 -0600 ++++ hdf5-1.10.7/java/examples/datasets/Makefile.am 2020-10-07 20:27:26.540707493 -0600 +@@ -27,7 +27,7 @@ classes: + test -d $(@D)/$(JAVAROOT) || $(MKDIR_P) $(@D)/$(JAVAROOT) + + pkgpath = examples/datasets +-hdfjarfile = jar$(PACKAGE_TARNAME)-$(PACKAGE_VERSION).jar ++hdfjarfile = $(PACKAGE_TARNAME).jar + CLASSPATH_ENV=CLASSPATH=.:$(JAVAROOT):$(top_builddir)/java/src/$(hdfjarfile):$(top_srcdir)/java/lib/slf4j-api-1.7.25.jar:$(top_srcdir)/java/lib/ext/slf4j-simple-1.7.25.jar:$$CLASSPATH + + jarfile = jar$(PACKAGE_TARNAME)datasets.jar +diff -up hdf5-1.10.7/java/examples/datatypes/JavaDatatypeExample.sh.in.build hdf5-1.10.7/java/examples/datatypes/JavaDatatypeExample.sh.in +--- hdf5-1.10.7/java/examples/datatypes/JavaDatatypeExample.sh.in.build 2020-02-05 19:04:23.000000000 -0700 ++++ hdf5-1.10.7/java/examples/datatypes/JavaDatatypeExample.sh.in 2020-10-07 20:27:26.541707501 -0600 +@@ -36,7 +36,7 @@ HDFLIB_HOME="$top_srcdir/java/lib" + BLDLIBDIR="$top_builddir/hdf5/lib" + BLDDIR="." + HDFTEST_HOME="$top_srcdir/java/examples/datatypes" +-JARFILE=jar@PACKAGE_TARNAME@-@PACKAGE_VERSION@.jar ++JARFILE=@PACKAGE_TARNAME@.jar + TESTJARFILE=jar@PACKAGE_TARNAME@datatypes.jar + test -d $BLDLIBDIR || mkdir -p $BLDLIBDIR + +diff -up hdf5-1.10.7/java/examples/datatypes/Makefile.am.build hdf5-1.10.7/java/examples/datatypes/Makefile.am +--- hdf5-1.10.7/java/examples/datatypes/Makefile.am.build 2020-08-27 21:38:23.000000000 -0600 ++++ hdf5-1.10.7/java/examples/datatypes/Makefile.am 2020-10-07 20:27:26.541707501 -0600 +@@ -27,7 +27,7 @@ classes: + test -d $(@D)/$(JAVAROOT) || $(MKDIR_P) $(@D)/$(JAVAROOT) + + pkgpath = examples/datatypes +-hdfjarfile = jar$(PACKAGE_TARNAME)-$(PACKAGE_VERSION).jar ++hdfjarfile = $(PACKAGE_TARNAME).jar + CLASSPATH_ENV=CLASSPATH=.:$(JAVAROOT):$(top_builddir)/java/src/$(hdfjarfile):$(top_srcdir)/java/lib/slf4j-api-1.7.25.jar:$(top_srcdir)/java/lib/ext/slf4j-simple-1.7.25.jar:$$CLASSPATH + + jarfile = jar$(PACKAGE_TARNAME)datatypes.jar +diff -up hdf5-1.10.7/java/examples/groups/JavaGroupExample.sh.in.build hdf5-1.10.7/java/examples/groups/JavaGroupExample.sh.in +--- hdf5-1.10.7/java/examples/groups/JavaGroupExample.sh.in.build 2020-02-05 19:04:23.000000000 -0700 ++++ hdf5-1.10.7/java/examples/groups/JavaGroupExample.sh.in 2020-10-07 20:27:26.541707501 -0600 +@@ -37,7 +37,7 @@ BLDLIBDIR="$top_builddir/hdf5/lib" + BLDITERDIR="./groups" + BLDDIR="." + HDFTEST_HOME="$top_srcdir/java/examples/groups" +-JARFILE=jar@PACKAGE_TARNAME@-@PACKAGE_VERSION@.jar ++JARFILE=@PACKAGE_TARNAME@.jar + TESTJARFILE=jar@PACKAGE_TARNAME@groups.jar + test -d $BLDLIBDIR || mkdir -p $BLDLIBDIR + test -d $BLDITERDIR || mkdir -p $BLDITERDIR +diff -up hdf5-1.10.7/java/examples/groups/Makefile.am.build hdf5-1.10.7/java/examples/groups/Makefile.am +--- hdf5-1.10.7/java/examples/groups/Makefile.am.build 2020-08-27 21:38:23.000000000 -0600 ++++ hdf5-1.10.7/java/examples/groups/Makefile.am 2020-10-07 20:27:26.542707509 -0600 +@@ -27,7 +27,7 @@ classes: + test -d $(@D)/$(JAVAROOT) || $(MKDIR_P) $(@D)/$(JAVAROOT) + + pkgpath = examples/groups +-hdfjarfile = jar$(PACKAGE_TARNAME)-$(PACKAGE_VERSION).jar ++hdfjarfile = $(PACKAGE_TARNAME).jar + CLASSPATH_ENV=CLASSPATH=.:$(JAVAROOT):$(top_builddir)/java/src/$(hdfjarfile):$(top_srcdir)/java/lib/slf4j-api-1.7.25.jar:$(top_srcdir)/java/lib/ext/slf4j-simple-1.7.25.jar:$$CLASSPATH + + jarfile = jar$(PACKAGE_TARNAME)groups.jar +diff -up hdf5-1.10.7/java/examples/intro/JavaIntroExample.sh.in.build hdf5-1.10.7/java/examples/intro/JavaIntroExample.sh.in +--- hdf5-1.10.7/java/examples/intro/JavaIntroExample.sh.in.build 2020-02-05 19:04:23.000000000 -0700 ++++ hdf5-1.10.7/java/examples/intro/JavaIntroExample.sh.in 2020-10-07 20:27:26.542707509 -0600 +@@ -36,7 +36,7 @@ HDFLIB_HOME="$top_srcdir/java/lib" + BLDLIBDIR="$top_builddir/hdf5/lib" + BLDDIR="." + HDFTEST_HOME="$top_srcdir/java/examples/intro" +-JARFILE=jar@PACKAGE_TARNAME@-@PACKAGE_VERSION@.jar ++JARFILE=@PACKAGE_TARNAME@.jar + TESTJARFILE=jar@PACKAGE_TARNAME@intro.jar + test -d $BLDLIBDIR || mkdir -p $BLDLIBDIR + +diff -up hdf5-1.10.7/java/examples/intro/Makefile.am.build hdf5-1.10.7/java/examples/intro/Makefile.am +--- hdf5-1.10.7/java/examples/intro/Makefile.am.build 2020-08-27 21:38:23.000000000 -0600 ++++ hdf5-1.10.7/java/examples/intro/Makefile.am 2020-10-07 20:27:26.542707509 -0600 +@@ -27,7 +27,7 @@ classes: + test -d $(@D)/$(JAVAROOT) || $(MKDIR_P) $(@D)/$(JAVAROOT) + + pkgpath = examples/intro +-hdfjarfile = jar$(PACKAGE_TARNAME)-$(PACKAGE_VERSION).jar ++hdfjarfile = $(PACKAGE_TARNAME).jar + CLASSPATH_ENV=CLASSPATH=.:$(JAVAROOT):$(top_builddir)/java/src/$(hdfjarfile):$(top_srcdir)/java/lib/slf4j-api-1.7.25.jar:$(top_srcdir)/java/lib/ext/slf4j-simple-1.7.25.jar:$$CLASSPATH + + jarfile = jar$(PACKAGE_TARNAME)intro.jar +diff -up hdf5-1.10.7/java/src/Makefile.am.build hdf5-1.10.7/java/src/Makefile.am +--- hdf5-1.10.7/java/src/Makefile.am.build 2020-09-04 15:50:58.000000000 -0600 ++++ hdf5-1.10.7/java/src/Makefile.am 2020-10-07 20:27:26.542707509 -0600 +@@ -33,8 +33,8 @@ JAVAROOT = .classes + classes: + test -d $(@D)/$(JAVAROOT) || $(MKDIR_P) $(@D)/$(JAVAROOT) + +-jarfile = jar$(PACKAGE_TARNAME)-$(PACKAGE_VERSION).jar +-hdf5_javadir = $(libdir) ++jarfile = $(PACKAGE_TARNAME).jar ++hdf5_javadir = $(prefix)/lib/java + + pkgpath = hdf/hdf5lib + CLASSPATH_ENV=CLASSPATH=.:$(top_srcdir)/java/lib/slf4j-api-1.7.25.jar:$$CLASSPATH +diff -up hdf5-1.10.7/java/test/junit.sh.in.build hdf5-1.10.7/java/test/junit.sh.in +--- hdf5-1.10.7/java/test/junit.sh.in.build 2020-09-04 15:50:58.000000000 -0600 ++++ hdf5-1.10.7/java/test/junit.sh.in 2020-10-07 22:14:59.047682005 -0600 +@@ -46,7 +46,7 @@ HDFLIB_HOME="$top_srcdir/java/lib" + BLDDIR="." + BLDLIBDIR="$BLDDIR/testlibs" + HDFTEST_HOME="$top_srcdir/java/test" +-JARFILE=jar@PACKAGE_TARNAME@-@PACKAGE_VERSION@.jar ++JARFILE=@PACKAGE_TARNAME@.jar + TESTJARFILE=jar@PACKAGE_TARNAME@test.jar + test -d $BLDLIBDIR || mkdir -p $BLDLIBDIR + +diff -up hdf5-1.10.7/java/test/Makefile.am.build hdf5-1.10.7/java/test/Makefile.am +--- hdf5-1.10.7/java/test/Makefile.am.build 2020-09-04 15:50:58.000000000 -0600 ++++ hdf5-1.10.7/java/test/Makefile.am 2020-10-07 20:27:26.543707517 -0600 +@@ -27,7 +27,7 @@ classes: + test -d $(@D)/$(JAVAROOT) || $(MKDIR_P) $(@D)/$(JAVAROOT) + + pkgpath = test +-hdfjarfile = jar$(PACKAGE_TARNAME)-$(PACKAGE_VERSION).jar ++hdfjarfile = $(PACKAGE_TARNAME).jar + CLASSPATH_ENV=CLASSPATH=.:$(JAVAROOT):$(top_builddir)/java/src/$(hdfjarfile):$(top_srcdir)/java/lib/junit.jar:$(top_srcdir)/java/lib/hamcrest-core.jar:$(top_srcdir)/java/lib/slf4j-api-1.7.25.jar:$(top_srcdir)/java/lib/ext/slf4j-simple-1.7.25.jar:$$CLASSPATH + + jarfile = jar$(PACKAGE_TARNAME)test.jar diff --git a/SOURCES/hdf5-warning.patch b/SOURCES/hdf5-warning.patch new file mode 100644 index 0000000..25ff9e4 --- /dev/null +++ b/SOURCES/hdf5-warning.patch @@ -0,0 +1,67 @@ +diff -up hdf5-1.10.7/testpar/t_cache.c.warning hdf5-1.10.7/testpar/t_cache.c +--- hdf5-1.10.7/testpar/t_cache.c.warning 2020-09-04 15:50:58.000000000 -0600 ++++ hdf5-1.10.7/testpar/t_cache.c 2020-10-07 20:23:01.877566435 -0600 +@@ -80,8 +80,8 @@ long local_pins = 0; + + + /* the following fields are used by the server process only */ +-int total_reads = 0; +-int total_writes = 0; ++unsigned total_reads = 0; ++unsigned total_writes = 0; + + + /***************************************************************************** +@@ -176,8 +176,8 @@ struct datum + hbool_t local_pinned; + hbool_t cleared; + hbool_t flushed; +- int reads; +- int writes; ++ unsigned reads; ++ unsigned writes; + int index; + struct H5AC_aux_t * aux_ptr; + }; +@@ -2445,12 +2445,12 @@ static herr_t + datum_image_len(const void *thing, size_t *image_len) + { + int idx; +- struct datum * entry_ptr; ++ const struct datum * entry_ptr; + + HDassert( thing ); + HDassert( image_len ); + +- entry_ptr = (struct datum *)thing; ++ entry_ptr = (const struct datum *)thing; + + idx = addr_to_datum_index(entry_ptr->base_addr); + +@@ -4612,7 +4612,7 @@ verify_entry_reads(haddr_t addr, + int expected_entry_reads) + { + hbool_t success = TRUE; +- int reported_entry_reads = 0; ++ unsigned reported_entry_reads = 0; + struct mssg_t mssg; + + if ( success ) { +@@ -4719,7 +4719,7 @@ verify_entry_writes(haddr_t addr, + int expected_entry_writes) + { + hbool_t success = TRUE; +- int reported_entry_writes = 0; ++ unsigned reported_entry_writes = 0; + struct mssg_t mssg; + + if ( success ) { +@@ -4824,7 +4824,7 @@ static hbool_t + verify_total_reads(int expected_total_reads) + { + hbool_t success = TRUE; /* will set to FALSE if appropriate. */ +- long reported_total_reads; ++ unsigned reported_total_reads; + struct mssg_t mssg; + + if ( success ) { diff --git a/SOURCES/hdf5-wrappers.patch b/SOURCES/hdf5-wrappers.patch new file mode 100644 index 0000000..ff721bb --- /dev/null +++ b/SOURCES/hdf5-wrappers.patch @@ -0,0 +1,109 @@ +diff -up hdf5-1.10.7/bin/h5cc.in.wrappers hdf5-1.10.7/bin/h5cc.in +--- hdf5-1.10.7/bin/h5cc.in.wrappers 2020-10-07 20:24:29.127283333 -0600 ++++ hdf5-1.10.7/bin/h5cc.in 2020-10-07 20:27:05.289536904 -0600 +@@ -89,10 +89,10 @@ CLINKERBASE="@CC@" + # paths and libraries from AM_LDFLAGS, LDFLAGS, AM_LIBS or LIBS carried in + # from the hdf5 build. The order of the flags is intended to give precedence + # to the user's flags. +-H5BLD_CFLAGS="@AM_CFLAGS@ @CFLAGS@" ++H5BLD_CFLAGS= + H5BLD_CPPFLAGS="@AM_CPPFLAGS@ @CPPFLAGS@" +-H5BLD_LDFLAGS="@AM_LDFLAGS@ @LDFLAGS@" +-H5BLD_LIBS="@LIBS@" ++H5BLD_LDFLAGS= ++H5BLD_LIBS= + + CC="${HDF5_CC:-$CCBASE}" + CLINKER="${HDF5_CLINKER:-$CLINKERBASE}" +@@ -105,7 +105,8 @@ LIBS="${HDF5_LIBS:-$LIBSBASE}" + # available library is shared, it will be used by default. The user can + # override either default, although choosing an unavailable library will result + # in link errors. +-STATIC_AVAILABLE="@enable_static@" ++# Fedora prefers shared libraries ++STATIC_AVAILABLE=no + if test "${STATIC_AVAILABLE}" = "yes"; then + USE_SHARED_LIB="${HDF5_USE_SHLIB:-no}" + else +@@ -385,7 +386,7 @@ if test "x$do_link" = "xyes"; then + # paths and libraries from AM_LDFLAGS, LDFLAGS, AM_LIBS or LIBS carried in + # from the hdf5 build. The order of the flags is intended to give precedence + # to the user's flags. +- $SHOW $CLINKER $H5BLD_CPPFLAGS $CPPFLAGS $H5BLD_CFLAGS $CFLAGS $LDFLAGS $clibpath $link_objs $LIBS $link_args $shared_link ++ $SHOW $CLINKER $H5BLD_CPPFLAGS $CPPFLAGS $H5BLD_CFLAGS $CFLAGS $LDFLAGS $clibpath $link_objs $LIBS $link_args + status=$? + fi + +diff -up hdf5-1.10.7/c++/src/h5c++.in.wrappers hdf5-1.10.7/c++/src/h5c++.in +--- hdf5-1.10.7/c++/src/h5c++.in.wrappers 2020-08-27 21:38:23.000000000 -0600 ++++ hdf5-1.10.7/c++/src/h5c++.in 2020-10-07 20:24:29.126283325 -0600 +@@ -87,10 +87,10 @@ CXXLINKERBASE="@CXX@" + # paths and libraries from AM_LDFLAGS, LDFLAGS, AM_LIBS or LIBS carried in + # from the hdf5 build. The order of the flags is intended to give precedence + # to the user's flags. +-H5BLD_CXXFLAGS="@AM_CXXFLAGS@ @CXXFLAGS@" ++H5BLD_CXXFLAGS= + H5BLD_CPPFLAGS="@AM_CPPFLAGS@ @CPPFLAGS@" +-H5BLD_LDFLAGS="@AM_LDFLAGS@ @LDFLAGS@" +-H5BLD_LIBS="@LIBS@" ++H5BLD_LDFLAGS= ++H5BLD_LIBS= + + CXX="${HDF5_CXX:-$CXXBASE}" + CXXLINKER="${HDF5_CLINKER:-$CXXLINKERBASE}" +@@ -103,7 +103,8 @@ LIBS="${HDF5_LIBS:-$LIBSBASE}" + # available library is shared, it will be used by default. The user can + # override either default, although choosing an unavailable library will result + # in link errors. +-STATIC_AVAILABLE="@enable_static@" ++# Fedora prefers shared libraries ++STATIC_AVAILABLE=no + if test "${STATIC_AVAILABLE}" = "yes"; then + USE_SHARED_LIB="${HDF5_USE_SHLIB:-no}" + else +@@ -385,7 +386,7 @@ if test "x$do_link" = "xyes"; then + # from the hdf5 build. The order of the flags is intended to give precedence + # to the user's flags. + +- $SHOW $CXXLINKER $H5BLD_CPPFLAGS $CPPFLAGS $H5BLD_CXXFLAGS $CXXFLAGS $LDFLAGS $clibpath $link_objs $LIBS $link_args $shared_link ++ $SHOW $CXXLINKER $H5BLD_CPPFLAGS $CPPFLAGS $H5BLD_CXXFLAGS $CXXFLAGS $LDFLAGS $clibpath $link_objs $LIBS $link_args + + status=$? + fi +diff -up hdf5-1.10.7/fortran/src/h5fc.in.wrappers hdf5-1.10.7/fortran/src/h5fc.in +--- hdf5-1.10.7/fortran/src/h5fc.in.wrappers 2020-08-27 21:38:23.000000000 -0600 ++++ hdf5-1.10.7/fortran/src/h5fc.in 2020-10-07 20:25:53.793962985 -0600 +@@ -83,11 +83,11 @@ FLINKERBASE="@FC@" + # libraries in $link_args, followed by any external library paths and libraries + # from AM_LDFLAGS, LDFLAGS, AM_LIBS or LIBS carried in from the hdf5 build. + # The order of the flags is intended to give precedence to the user's flags. +-H5BLD_FCFLAGS="@AM_FCFLAGS@ @FCFLAGS@" ++H5BLD_FCFLAGS= + F9XMODFLAG="@F9XMODFLAG@" + F9XSUFFIXFLAG="@F9XSUFFIXFLAG@" +-H5BLD_LDFLAGS="@AM_LDFLAGS@ @LDFLAGS@" +-H5BLD_LIBS="@LIBS@" ++H5BLD_LDFLAGS= ++H5BLD_LIBS= + + FC="${HDF5_FC:-$FCBASE}" + FLINKER="${HDF5_FLINKER:-$FLINKERBASE}" +@@ -99,7 +99,8 @@ LIBS="${HDF5_LIBS:-$LIBSBASE}" + # available library is shared, it will be used by default. The user can + # override either default, although choosing an unavailable library will result + # in link errors. +-STATIC_AVAILABLE="@enable_static@" ++# Fedora prefers shared libraries ++STATIC_AVAILABLE=no + if test "${STATIC_AVAILABLE}" = "yes"; then + USE_SHARED_LIB="${HDF5_USE_SHLIB:-no}" + else +@@ -363,7 +364,7 @@ if test "x$do_link" = "xyes"; then + # libraries in $link_args, followed by any external library paths and libraries + # from AM_LDFLAGS, LDFLAGS, AM_LIBS or LIBS carried in from the hdf5 build. + # The order of the flags is intended to give precedence to the user's flags. +- $SHOW $FLINKER $FCFLAGS $H5BLD_FCFLAGS $F9XSUFFIXFLAG $LDFLAGS $fmodules $link_objs $LIBS $link_args $shared_link ++ $SHOW $FLINKER $FCFLAGS $H5BLD_FCFLAGS $F9XSUFFIXFLAG $LDFLAGS $fmodules $link_objs $LIBS $link_args + status=$? + fi + diff --git a/SPECS/hdf5.spec b/SPECS/hdf5.spec new file mode 100644 index 0000000..952063d --- /dev/null +++ b/SPECS/hdf5.spec @@ -0,0 +1,999 @@ +%global macrosdir %(d=%{_rpmconfigdir}/macros.d; [ -d $d ] || d=%{_sysconfdir}/rpm; echo $d) + +# Patch version? +%global snaprel %{nil} + +## WARNING: Wait for netcdf 4.8.0 ! + +# NOTE: Try not to release new versions to released versions of Fedora +# You need to recompile all users of HDF5 for each version change +Name: hdf5 +Version: 1.10.7 +Release: 2%{?dist} +Summary: A general purpose library and file format for storing scientific data +License: BSD +URL: https://portal.hdfgroup.org/display/HDF5/HDF5 + +Source0: https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-%{version}/src/hdf5-%{version}.tar.bz2 +Source1: h5comp +# For man pages +Source2: http://ftp.us.debian.org/debian/pool/main/h/hdf5/hdf5_1.10.6+repack-2.debian.tar.xz +Patch0: hdf5-LD_LIBRARY_PATH.patch +# Fix some warnings +Patch2: hdf5-warning.patch +# Fix java build +Patch3: hdf5-build.patch +# Remove Fedora build flags from h5cc/h5c++/h5fc +# https://bugzilla.redhat.com/show_bug.cgi?id=1794625 +Patch5: hdf5-wrappers.patch + +BuildRequires: gcc-gfortran +BuildRequires: java-devel +BuildRequires: javapackages-tools +BuildRequires: hamcrest +BuildRequires: junit +BuildRequires: slf4j +BuildRequires: krb5-devel +BuildRequires: openssl-devel +BuildRequires: time +BuildRequires: zlib-devel +# For patches/rpath +BuildRequires: automake +BuildRequires: libtool +# Needed for mpi tests +BuildRequires: openssh-clients +BuildRequires: libaec-devel +BuildRequires: gcc, gcc-c++ + +%global with_mpich 1 +%global with_openmpi 1 + +%if %{with_mpich} +%global mpi_list mpich +%endif +%if %{with_openmpi} +%global mpi_list %{?mpi_list} openmpi +%endif + +%description +HDF5 is a general purpose library and file format for storing scientific data. +HDF5 can store two primary objects: datasets and groups. A dataset is +essentially a multidimensional array of data elements, and a group is a +structure for organizing objects in an HDF5 file. Using these two basic +objects, one can create and store almost any kind of scientific data +structure, such as images, arrays of vectors, and structured and unstructured +grids. You can also mix and match them in HDF5 files according to your needs. + + +%package devel +Summary: HDF5 development files +Requires: %{name}%{?_isa} = %{version}-%{release} +Requires: libaec-devel%{?_isa} +Requires: zlib-devel%{?_isa} +Requires: gcc-gfortran%{?_isa} + +%description devel +HDF5 development headers and libraries. + +%package -n java-hdf5 +Summary: HDF5 java library +Requires: slf4j +Obsoletes: jhdf5 < 3.3.1-2 + +%description -n java-hdf5 +HDF5 java library + +%package static +Summary: HDF5 static libraries +Requires: %{name}-devel = %{version}-%{release} + +%description static +HDF5 static libraries. + + +%if %{with_mpich} +%package mpich +Summary: HDF5 mpich libraries +BuildRequires: mpich-devel +Provides: %{name}-mpich2 = %{version}-%{release} +Obsoletes: %{name}-mpich2 < 1.8.11-4 + +%description mpich +HDF5 parallel mpich libraries + + +%package mpich-devel +Summary: HDF5 mpich development files +Requires: %{name}-mpich%{?_isa} = %{version}-%{release} +Requires: libaec-devel%{?_isa} +Requires: zlib-devel%{?_isa} +Requires: mpich-devel%{?_isa} +Provides: %{name}-mpich2-devel = %{version}-%{release} +Obsoletes: %{name}-mpich2-devel < 1.8.11-4 + +%description mpich-devel +HDF5 parallel mpich development files + + +%package mpich-static +Summary: HDF5 mpich static libraries +Requires: %{name}-mpich-devel%{?_isa} = %{version}-%{release} +Provides: %{name}-mpich2-static = %{version}-%{release} +Obsoletes: %{name}-mpich2-static < 1.8.11-4 + +%description mpich-static +HDF5 parallel mpich static libraries +%endif + + +%if %{with_openmpi} +%package openmpi +Summary: HDF5 openmpi libraries +BuildRequires: openmpi-devel +BuildRequires: make + +%description openmpi +HDF5 parallel openmpi libraries + + +%package openmpi-devel +Summary: HDF5 openmpi development files +Requires: %{name}-openmpi%{?_isa} = %{version}-%{release} +Requires: libaec-devel%{?_isa} +Requires: zlib-devel%{?_isa} +Requires: openmpi-devel%{?_isa} + +%description openmpi-devel +HDF5 parallel openmpi development files + + +%package openmpi-static +Summary: HDF5 openmpi static libraries +Requires: %{name}-openmpi-devel%{?_isa} = %{version}-%{release} + +%description openmpi-static +HDF5 parallel openmpi static libraries +%endif + + +%prep +%setup -q -a 2 -n %{name}-%{version}%{?snaprel} +%patch0 -p1 -b .LD_LIBRARY_PATH +%patch2 -p1 -b .warning +%patch3 -p1 -b .build +%patch5 -p1 -b .wrappers + +# Replace jars with system versions +# hamcrest-core is obsoleted in hamcrest-2.2 +# Junit tests are failing with junit-4.13.1 +%if 0%{?rhel} >= 9 || 0%{?fedora} > 34 +find . ! -name junit.jar -name "*.jar" -delete +ln -s %{_javadir}/hamcrest/hamcrest.jar java/lib/hamcrest-core.jar +%else +find . -name "*.jar" -delete +ln -s %{_javadir}/hamcrest/core.jar java/lib/hamcrest-core.jar +ln -s %{_javadir}/junit.jar java/lib/junit.jar +# Fix test output +junit_ver=$(sed -n '//{s/^.*>\([0-9]\.[0-9.]*\)<.*/\1/;p;q}' /usr/share/maven-poms/junit.pom) +sed -i -e "s/JUnit version .*/JUnit version $junit_ver/" java/test/testfiles/JUnit-*.txt +%endif +ln -s %{_javadir}/slf4j/api.jar java/lib/slf4j-api-1.7.25.jar +ln -s %{_javadir}/slf4j/nop.jar java/lib/ext/slf4j-nop-1.7.25.jar +ln -s %{_javadir}/slf4j/simple.jar java/lib/ext/slf4j-simple-1.7.25.jar + +# Force shared by default for compiler wrappers (bug #1266645) +sed -i -e '/^STATIC_AVAILABLE=/s/=.*/=no/' */*/h5[cf]*.in +autoreconf -f -i + +# Modify low optimization level for gnu compilers +sed -e 's|-O -finline-functions|-O3 -finline-functions|g' -i config/gnu-flags + + +%build +#Do out of tree builds +%global _configure ../configure +#Common configure options +%global configure_opts \\\ + --disable-silent-rules \\\ + --enable-fortran \\\ + --enable-fortran2003 \\\ + --enable-hl \\\ + --enable-shared \\\ + --with-szlib \\\ +%{nil} +# --enable-cxx and --enable-parallel flags are incompatible +# --with-mpe=DIR Use MPE instrumentation [default=no] +# --enable-cxx/fortran/parallel and --enable-threadsafe flags are incompatible + +#Serial build +export CC=gcc +export CXX=g++ +export F9X=gfortran +export LDFLAGS="%{__global_ldflags} -fPIC -Wl,-z,now -Wl,--as-needed" +mkdir build +pushd build +ln -s ../configure . +%configure \ + %{configure_opts} \ + --enable-cxx \ + --enable-java +sed -i -e 's! -shared ! -Wl,--as-needed\0!g' libtool +make LDFLAGS="%{__global_ldflags} -fPIC -Wl,-z,now -Wl,--as-needed" +popd + +#MPI builds +export LDFLAGS="%{__global_ldflags} -fPIC -Wl,-z,now -Wl,--as-needed" +for mpi in %{?mpi_list} +do + mkdir $mpi + pushd $mpi + module load mpi/$mpi-%{_arch} + ln -s ../configure . + %configure \ + %{configure_opts} \ + CC=mpicc CXX=mpicxx F9X=mpif90 \ + FCFLAGS="$FCFLAGS -I$MPI_FORTRAN_MOD_DIR" \ + --enable-parallel \ + --exec-prefix=%{_libdir}/$mpi \ + --libdir=%{_libdir}/$mpi/lib \ + --bindir=%{_libdir}/$mpi/bin \ + --sbindir=%{_libdir}/$mpi/sbin \ + --includedir=%{_includedir}/$mpi-%{_arch} \ + --datarootdir=%{_libdir}/$mpi/share \ + --mandir=%{_libdir}/$mpi/share/man + sed -i -e 's! -shared ! -Wl,--as-needed\0!g' libtool + make LDFLAGS="%{__global_ldflags} -fPIC -Wl,-z,now -Wl,--as-needed" + module purge + popd +done + + +%install +%make_install -C build +rm %{buildroot}%{_libdir}/*.la +#Fortran modules +mkdir -p %{buildroot}%{_fmoddir} +mv %{buildroot}%{_includedir}/*.mod %{buildroot}%{_fmoddir} +for mpi in %{?mpi_list} +do + module load mpi/$mpi-%{_arch} + make -C $mpi install DESTDIR=%{buildroot} + rm %{buildroot}/%{_libdir}/$mpi/lib/*.la + #Fortran modules + mkdir -p %{buildroot}${MPI_FORTRAN_MOD_DIR} + mv %{buildroot}%{_includedir}/${mpi}-%{_arch}/*.mod %{buildroot}${MPI_FORTRAN_MOD_DIR}/ + module purge +done +#Fixup example permissions +find %{buildroot}%{_datadir} \( -name '*.[ch]*' -o -name '*.f90' \) -exec chmod -x {} + + +#Fixup headers and scripts for multiarch +%ifarch x86_64 ppc64 ia64 s390x sparc64 alpha +sed -i -e s/H5pubconf.h/H5pubconf-64.h/ %{buildroot}%{_includedir}/H5public.h +mv %{buildroot}%{_includedir}/H5pubconf.h \ + %{buildroot}%{_includedir}/H5pubconf-64.h +for x in h5c++ h5cc h5fc +do + mv %{buildroot}%{_bindir}/${x} \ + %{buildroot}%{_bindir}/${x}-64 + install -m 0755 %SOURCE1 %{buildroot}%{_bindir}/${x} +done +%else +sed -i -e s/H5pubconf.h/H5pubconf-32.h/ %{buildroot}%{_includedir}/H5public.h +mv %{buildroot}%{_includedir}/H5pubconf.h \ + %{buildroot}%{_includedir}/H5pubconf-32.h +for x in h5c++ h5cc h5fc +do + mv %{buildroot}%{_bindir}/${x} \ + %{buildroot}%{_bindir}/${x}-32 + install -m 0755 %SOURCE1 %{buildroot}%{_bindir}/${x} +done +%endif +# rpm macro for version checking +mkdir -p %{buildroot}%{macrosdir} +cat > %{buildroot}%{macrosdir}/macros.hdf5 <= (unsigned long) (nb)' failed. +## %ifarch armv7hl %{ix86} s390x +## make -C $mpi check || : +## %else +## make -C $mpi check +## %endif +## module purge +## done + + +%ldconfig_scriptlets + + +%files +%license COPYING +%doc MANIFEST README.txt release_docs/RELEASE.txt +%doc release_docs/HISTORY*.txt +%{_bindir}/gif2h5 +%{_bindir}/h52gif +%{_bindir}/h5clear +%{_bindir}/h5copy +%{_bindir}/h5debug +%{_bindir}/h5diff +%{_bindir}/h5dump +%{_bindir}/h5format_convert +%{_bindir}/h5import +%{_bindir}/h5jam +%{_bindir}/h5ls +%{_bindir}/h5mkgrp +%{_bindir}/h5perf_serial +%{_bindir}/h5repack +%{_bindir}/h5repart +%{_bindir}/h5stat +%{_bindir}/h5unjam +%{_bindir}/h5watch +%{_bindir}/mirror_server +%{_bindir}/mirror_server_stop +%{_libdir}/libhdf5.so.103* +%{_libdir}/libhdf5_cpp.so.103* +%{_libdir}/libhdf5_fortran.so.102* +%{_libdir}/libhdf5hl_fortran.so.100* +%{_libdir}/libhdf5_hl.so.100* +%{_libdir}/libhdf5_hl_cpp.so.100* +%{_mandir}/man1/gif2h5.1* +%{_mandir}/man1/h52gif.1* +%{_mandir}/man1/h5copy.1* +%{_mandir}/man1/h5diff.1* +%{_mandir}/man1/h5dump.1* +%{_mandir}/man1/h5import.1* +%{_mandir}/man1/h5jam.1* +%{_mandir}/man1/h5ls.1* +%{_mandir}/man1/h5mkgrp.1* +%{_mandir}/man1/h5perf_serial.1* +%{_mandir}/man1/h5repack.1* +%{_mandir}/man1/h5repart.1* +%{_mandir}/man1/h5stat.1* +%{_mandir}/man1/h5unjam.1* + +%files devel +%{macrosdir}/macros.hdf5 +%{_bindir}/h5c++* +%{_bindir}/h5cc* +%{_bindir}/h5fc* +%{_bindir}/h5redeploy +%{_includedir}/*.h +%{_libdir}/*.so +%{_libdir}/*.settings +%{_fmoddir}/*.mod +%{_datadir}/hdf5_examples/ +%{_mandir}/man1/h5c++.1* +%{_mandir}/man1/h5cc.1* +%{_mandir}/man1/h5debug.1* +%{_mandir}/man1/h5fc.1* +%{_mandir}/man1/h5redeploy.1* + +%files static +%{_libdir}/*.a + +%files -n java-hdf5 +%{_jnidir}/hdf5.jar +%{_libdir}/%{name}/ + +%if %{with_mpich} +%files mpich +%license COPYING +%doc MANIFEST README.txt release_docs/RELEASE.txt +%doc release_docs/HISTORY*.txt +%{_libdir}/mpich/bin/gif2h5 +%{_libdir}/mpich/bin/h52gif +%{_libdir}/mpich/bin/h5clear +%{_libdir}/mpich/bin/h5copy +%{_libdir}/mpich/bin/h5debug +%{_libdir}/mpich/bin/h5diff +%{_libdir}/mpich/bin/h5dump +%{_libdir}/mpich/bin/h5format_convert +%{_libdir}/mpich/bin/h5import +%{_libdir}/mpich/bin/h5jam +%{_libdir}/mpich/bin/h5ls +%{_libdir}/mpich/bin/h5mkgrp +%{_libdir}/mpich/bin/h5redeploy +%{_libdir}/mpich/bin/h5repack +%{_libdir}/mpich/bin/h5perf +%{_libdir}/mpich/bin/h5perf_serial +%{_libdir}/mpich/bin/h5repart +%{_libdir}/mpich/bin/h5stat +%{_libdir}/mpich/bin/h5unjam +%{_libdir}/mpich/bin/h5watch +%{_libdir}/mpich/bin/mirror_server +%{_libdir}/mpich/bin/mirror_server_stop +%{_libdir}/mpich/bin/ph5diff +%{_libdir}/mpich/lib/*.so.10* + +%files mpich-devel +%{_includedir}/mpich-%{_arch} +%{_fmoddir}/mpich/*.mod +%{_libdir}/mpich/bin/h5pcc +%{_libdir}/mpich/bin/h5pfc +%{_libdir}/mpich/lib/lib*.so +%{_libdir}/mpich/lib/lib*.settings +%{_libdir}/mpich/share/hdf5_examples/ +%{_libdir}/mpich/share/man/man1/h5pcc.1* +%{_libdir}/mpich/share/man/man1/h5pfc.1* + +%files mpich-static +%{_libdir}/mpich/lib/*.a +%endif + +%if %{with_openmpi} +%files openmpi +%license COPYING +%doc MANIFEST README.txt release_docs/RELEASE.txt +%doc release_docs/HISTORY*.txt +%{_libdir}/openmpi/bin/gif2h5 +%{_libdir}/openmpi/bin/h52gif +%{_libdir}/openmpi/bin/h5clear +%{_libdir}/openmpi/bin/h5copy +%{_libdir}/openmpi/bin/h5debug +%{_libdir}/openmpi/bin/h5diff +%{_libdir}/openmpi/bin/h5dump +%{_libdir}/openmpi/bin/h5format_convert +%{_libdir}/openmpi/bin/h5import +%{_libdir}/openmpi/bin/h5jam +%{_libdir}/openmpi/bin/h5ls +%{_libdir}/openmpi/bin/h5mkgrp +%{_libdir}/openmpi/bin/h5perf +%{_libdir}/openmpi/bin/h5perf_serial +%{_libdir}/openmpi/bin/h5redeploy +%{_libdir}/openmpi/bin/h5repack +%{_libdir}/openmpi/bin/h5repart +%{_libdir}/openmpi/bin/h5stat +%{_libdir}/openmpi/bin/h5unjam +%{_libdir}/openmpi/bin/h5watch +%{_libdir}/openmpi/bin/mirror_server +%{_libdir}/openmpi/bin/mirror_server_stop +%{_libdir}/openmpi/bin/ph5diff +%{_libdir}/openmpi/lib/*.so.10* + +%files openmpi-devel +%{_includedir}/openmpi-%{_arch} +%{_fmoddir}/openmpi/*.mod +%{_libdir}/openmpi/bin/h5pcc +%{_libdir}/openmpi/bin/h5pfc +%{_libdir}/openmpi/lib/lib*.so +%{_libdir}/openmpi/lib/lib*.settings +%{_libdir}/openmpi/share/hdf5_examples/ +%{_libdir}/openmpi/share/man/man1/h5pcc.1* +%{_libdir}/openmpi/share/man/man1/h5pfc.1* + +%files openmpi-static +%{_libdir}/openmpi/lib/*.a +%endif + + +%changelog +* Mon Aug 30 2021 Orion Poplawski - 1.10.7-2 +- Fix typo in h5fc (bz#1998879) + +* Mon Aug 09 2021 Orion Poplawski - 1.10.7-1 +- Update to 1.10.7 + +* Thu Jul 29 2021 Antonio Trande - 1.10.6-7 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild +- Use bundled junit +- Fix hamcrest symlinks in Fedora 35+ + +* Sun May 30 2021 Orion Poplawski - 1.10.6-6 +- Handle junit versions better + +* Tue Jan 26 2021 Fedora Release Engineering - 1.10.6-5 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild + +* Wed Oct 14 2020 Orion Poplawski - 1.10.6-4 +- Drop MPI tests for now - hanging +- Build openmpi for EL s390x again + +* Tue Jul 28 2020 Fedora Release Engineering - 1.10.6-3 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild + +* Fri Jul 10 2020 Jiri Vanek - 1.10.6-2 +- Rebuilt for JDK-11, see https://fedoraproject.org/wiki/Changes/Java11 + +* Thu Jun 25 2020 Orion Poplawski - 1.10.6-1 +- Update to 1.10.6 + +* Wed Jan 29 2020 Fedora Release Engineering - 1.10.5-6 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild + +* Sun Jan 26 2020 Orion Poplawski - 1.10.5-5 +- Remove Fedora build flags from h5cc/h5c++/h5fc (bz#1794625) + +* Mon Nov 11 2019 Orion Poplawski - 1.10.5-4 +- Add upstream patch to fix 32-bit java tests + +* Thu Jul 25 2019 Fedora Release Engineering - 1.10.5-3 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild + +* Sat Apr 6 2019 Orion Poplawski - 1.10.5-2 +- Enable java + +* Sat Mar 16 2019 Orion Poplawski - 1.10.5-1 +- Update to 1.10.5 + +* Thu Feb 14 2019 Orion Poplawski - 1.8.20-6 +- Rebuild for openmpi 3.1.3 + +* Fri Feb 01 2019 Fedora Release Engineering - 1.8.20-5 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild + +* Fri Jul 13 2018 Fedora Release Engineering - 1.8.20-4 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild + +* Fri Feb 23 2018 Antonio Trande - 1.8.20-3 +- Force default ldflags for Fedora (bz#1548533) +- Switch -shared flag to -Wl,--as-needed +- Modify low optimization level for gnu compilers +- New URL + +* Tue Feb 20 2018 Antonio Trande - 1.8.20-2 +- Devel package with full versioned dependency +- Use %%make_install + +* Wed Feb 7 2018 Orion Poplawski - 1.8.20-1 +- Update to 1.8.20 + +* Wed Feb 07 2018 Fedora Release Engineering - 1.8.18-14 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild + +* Fri Feb 02 2018 Igor Gnatenko - 1.8.18-13 +- Switch to %%ldconfig_scriptlets + +* Wed Jan 31 2018 Orion Poplawski - 1.8.18-12 +- Rebuild for gfortran-8 + +* Fri Sep 08 2017 Dan Horák - 1.8.18-11 +- fix the compiler wrapper - s390x is 64-bit (#1489954) + +* Wed Aug 16 2017 Orion Poplawski - 1.8.18-10 +- Bump for rebuild + +* Wed Aug 16 2017 Orion Poplawski - 1.8.18-9 +- Make hdf5-devel require libaec + +* Sun Aug 06 2017 Christoph Junghans - 1.8.18-8 +- enable szip support through libaec + +* Wed Aug 02 2017 Fedora Release Engineering - 1.8.18-7 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild + +* Wed Jul 26 2017 Fedora Release Engineering - 1.8.18-6 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild + +* Sun Feb 05 2017 Kalev Lember - 1.8.18-5 +- Enable testsuite again now that gcc fixes have landed + +* Wed Feb 01 2017 Björn Esser - 1.8.18-4 +- Ignore testsuite on PPC64LE until GCC-7 is fixed + +* Sat Jan 28 2017 Björn Esser - 1.8.18-4 +- Rebuilt for GCC-7 + +* Fri Dec 30 2016 Orion Poplawski - 1.8.18-3 +- Install MPI Fortran module into proper location (bug #1409229) +- Use %%license + +* Thu Dec 8 2016 Dan Horák - 1.8.18-2 +- Enable openmpi for s390(x) on F>=26 + +* Mon Dec 5 2016 Orion Poplawski - 1.8.18-1 +- Update to 1.8.18 +- Add patch to fix build with -Werror=implicit-function-declaration + +* Fri Oct 21 2016 Orion Poplawski - 1.8.17-2 +- Rebuild for openmpi 2.0 + +* Wed Jun 29 2016 Orion Poplawski - 1.8.17-1 +- Update to 1.8.17 + +* Sun Mar 20 2016 Orion Poplawski - 1.8.16-4 +- Add patch to properly call MPI_Finalize() in t_pflush1 + +* Wed Mar 2 2016 Orion Poplawski - 1.8.16-3 +- Make hdf5-mpich-devel require mpich-devel (bug #1314091) + +* Wed Feb 03 2016 Fedora Release Engineering - 1.8.16-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild + +* Fri Nov 20 2015 Orion Poplawski - 1.8.16-1 +- Update to 1.8.16 + +* Fri Nov 20 2015 Orion Poplawski - 1.8.15-9.patch1 +- Use MPI_FORTRAN_MOD_DIR to locate MPI Fortran module + +* Fri Sep 25 2015 Orion Poplawski - 1.8.15-8.patch1 +- Force shared by default for compiler wrappers (bug #1266645) + +* Tue Sep 15 2015 Orion Poplawski - 1.8.15-7.patch1 +- Rebuild for openmpi 1.10.0 + +* Sat Aug 15 2015 Zbigniew Jędrzejewski-Szmek - 1.8.15-6.patch1 +- Rebuild for MPI provides + +* Sun Jul 26 2015 Sandro Mani - 1.8.15-5.patch1 +- Rebuild for RPM MPI Requires Provides Change + +* Wed Jun 17 2015 Fedora Release Engineering - 1.8.15-4.patch1 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild + +* Mon Jun 8 2015 Orion Poplawski - 1.8.15-3.patch1 +- Update to 1.8.15-patch1 + +* Fri Jun 05 2015 Dan Horák - 1.8.15-2 +- drop unnecessary patch, issue seems fixed with gcc5 + +* Sat May 16 2015 Orion Poplawski - 1.8.15-1 +- Update to 1.8.15 + +* Sat May 02 2015 Kalev Lember - 1.8.14-4 +- Rebuilt for GCC 5 C++11 ABI change + +* Wed Mar 11 2015 Orion Poplawski - 1.8.14-3 +- Rebuild for mpich 3.1.4 soname change + +* Mon Feb 16 2015 Orion Poplawski - 1.8.14-2 +- Rebuild for gcc 5 fortran module + +* Tue Jan 6 2015 Orion Poplawski - 1.8.14-1 +- Update to 1.8.14 + +* Wed Sep 3 2014 Orion Poplawski - 1.8.13-7 +- No longer build with -O0, seems to be working + +* Wed Aug 27 2014 Orion Poplawski - 1.8.13-6 +- Rebuild for openmpi Fortran ABI change + +* Sat Aug 16 2014 Fedora Release Engineering - 1.8.13-5 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild + +* Fri Jun 27 2014 Orion Poplawski - 1.8.13-4 +- Make build work if not building any mpi pacakges (bug #1113610) + +* Fri Jun 27 2014 Marcin Juszkiewicz - 1.8.13-3 +- Drop gnu-config patches replaced by %%configure macro + +* Sat Jun 07 2014 Fedora Release Engineering - 1.8.13-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild + +* Thu May 15 2014 Orion Poplawski - 1.8.13-1 +- Update to 1.8.13 + +* Mon Mar 24 2014 Orion Poplawski - 1.8.12-6 +- Add patch to add ppc64le to config.guess (bug #1080122) + +* Wed Mar 19 2014 Orion Poplawski - 1.8.12-5 +- Add patch to fix long double conversions on ppc64le (bug #1078173) +- Run autoreconf for patches and to remove rpaths + +* Sat Feb 22 2014 Deji Akingunola - 1.8.12-4 +- Rebuild for mpich-3.1 + +* Fri Jan 31 2014 Orion Poplawski 1.8.12-4 +- Fix rpm macros install dir + +* Wed Jan 29 2014 Orion Poplawski 1.8.12-3 +- Fix rpm/macros.hdf5 generation (bug #1059161) + +* Wed Jan 8 2014 Orion Poplawski 1.8.12-2 +- Update debian source +- Add patch for aarch64 support (bug #925545) + +* Fri Dec 27 2013 Orion Poplawski 1.8.12-1 +- Update to 1.8.12 + +* Fri Aug 30 2013 Dan Horák - 1.8.11-6 +- disable parallel tests on s390(x) + +* Sat Aug 03 2013 Fedora Release Engineering - 1.8.11-5 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild + +* Sat Jul 20 2013 Deji Akingunola - 1.8.11-4 +- Rename mpich2 sub-packages to mpich and rebuild for mpich-3.0 + +* Thu Jul 11 2013 Orion Poplawski 1.8.11-3 +- Rebuild for openmpi 1.7.2 + +* Fri Jun 7 2013 Orion Poplawski 1.8.11-2 +- Add man pages from debian (bug #971551) + +* Wed May 15 2013 Orion Poplawski 1.8.11-1 +- Update to 1.8.11 + +* Mon Mar 11 2013 Ralf Corsépius - 1.8.10-3 +- Remove %%config from %%{_sysconfdir}/rpm/macros.* + (https://fedorahosted.org/fpc/ticket/259). + +* Thu Feb 14 2013 Fedora Release Engineering - 1.8.10-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild + +* Wed Nov 14 2012 Orion Poplawski 1.8.10-1 +- Update to 1.8.10 +- Rebase LD_LIBRARY_PATH patch +- Drop ph5diff patch fixed upstream + +* Mon Nov 12 2012 Peter Robinson 1.8.9-5 +- Enable openmpi support on ARM as we now have it + +* Mon Nov 5 2012 Orion Poplawski 1.8.9-4 +- Rebuild for fixed openmpi f90 soname + +* Thu Nov 1 2012 Orion Poplawski 1.8.9-3 +- Rebuild for openmpi and mpich2 soname bumps + +* Thu Jul 19 2012 Fedora Release Engineering - 1.8.9-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild + +* Tue May 15 2012 Orion Poplawski 1.8.9-1 +- Update to 1.8.9 + +* Mon Feb 20 2012 Dan Horák 1.8.8-9 +- use %%{mpi_list} also for tests + +* Wed Feb 15 2012 Peter Robinson - 1.8.8-8 +- disable openmpi for ARM as we currently don't have it + +* Fri Feb 10 2012 Orion Poplawski 1.8.8-7 +- Add patch to fix parallel mpi tests +- Add patch to fix bug in parallel h5diff + +* Sat Jan 7 2012 Orion Poplawski 1.8.8-6 +- Enable Fortran 2003 support (bug 772387) + +* Wed Dec 21 2011 Dan Horák 1.8.8-5 +- reintroduce the tstlite patch for ppc64 and s390x + +* Thu Dec 01 2011 Caolán McNamara 1.8.8-4 +- Related: rhbz#758334 hdf5 doesn't build on ppc64 + +* Fri Nov 25 2011 Orion Poplawski 1.8.8-3 +- Enable static MPI builds + +* Wed Nov 16 2011 Orion Poplawski 1.8.8-2 +- Add rpm macro %%{_hdf5_version} for convenience + +* Tue Nov 15 2011 Orion Poplawski 1.8.8-1 +- Update to 1.8.8 +- Drop tstlite patch +- Add patch to avoid setting LD_LIBRARY_PATH + +* Wed Jun 01 2011 Karsten Hopp 1.8.7-2 +- drop ppc64 longdouble patch, not required anymore + +* Tue May 17 2011 Orion Poplawski 1.8.7-1 +- Update to 1.8.7 + +* Tue Mar 29 2011 Deji Akingunola - 1.8.6-2 +- Rebuild for mpich2 soname bump + +* Fri Feb 18 2011 Orion Poplawski 1.8.6-1 +- Update to 1.8.6-1 +- Update tstlite patch - not fixed yet + +* Wed Feb 09 2011 Fedora Release Engineering - 1.8.5.patch1-8 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild + +* Sun Feb 6 2011 Orion Poplawski 1.8.5.patch1-7 +- Add Requires: zlib-devel to hdf5-devel + +* Sun Dec 12 2010 Dan Horák 1.8.5.patch1-6 +- fully conditionalize MPI support + +* Wed Dec 8 2010 Orion Poplawski 1.8.5.patch1-5 +- Add EL6 compatibility - no mpich2 on ppc64 + +* Wed Oct 27 2010 Orion Poplawski 1.8.5.patch1-4 +- Really fixup all permissions + +* Wed Oct 27 2010 Orion Poplawski 1.8.5.patch1-3 +- Add docs to the mpi packages +- Fixup example source file permissions + +* Tue Oct 26 2010 Orion Poplawski 1.8.5.patch1-2 +- Build parallel hdf5 packages for mpich2 and openmpi +- Rework multiarch support and drop multiarch patch + +* Tue Sep 7 2010 Orion Poplawski 1.8.5.patch1-1 +- Update to 1.8.5-patch1 + +* Wed Jun 23 2010 Orion Poplawski 1.8.5-4 +- Re-add rebased tstlite patch - not fixed yet + +* Wed Jun 23 2010 Orion Poplawski 1.8.5-3 +- Update longdouble patch for 1.8.5 + +* Wed Jun 23 2010 Orion Poplawski 1.8.5-2 +- Re-add longdouble patch on ppc64 for EPEL builds + +* Mon Jun 21 2010 Orion Poplawski 1.8.5-1 +- Update to 1.8.5 +- Drop patches fixed upstream + +* Mon Mar 1 2010 Orion Poplawski 1.8.4.patch1-1 +- Update to 1.8.4-patch1 + +* Wed Jan 6 2010 Orion Poplawski 1.8.4-1 +- Update to 1.8.4 +- Must compile with -O0 due to gcc-4.4 incompatability +- No longer need -fno-strict-aliasing + +* Thu Oct 1 2009 Orion Poplawski 1.8.3-3.snap12 +- Update to 1.8.3-snap12 +- Update signal patch +- Drop detect and filter-as-option patch fixed upstream +- Drop ppc only patch +- Add patch to skip tstlite test for now, problem reported upstream +- Fixup some source file permissions + +* Fri Jul 24 2009 Fedora Release Engineering - 1.8.3-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild + +* Tue Jun 2 2009 Orion Poplawski 1.8.3-1 +- Update to 1.8.3 +- Update signal and detect patches +- Drop open patch fixed upstream + +* Sat Apr 18 2009 Karsten Hopp 1.8.2-1.1 +- fix s390x builds, s390x is 64bit, s390 is 32bit + +* Mon Feb 23 2009 Orion Poplawski 1.8.2-1 +- Update to 1.8.2 +- Add patch to compile H5detect without optimization - make detection + of datatype characteristics more robust - esp. long double +- Update signal patch +- Drop destdir patch fixed upstream +- Drop scaleoffset patch +- Re-add -fno-strict-aliasing +- Keep settings file needed for -showconfig (bug #481032) +- Wrapper script needs to pass arguments (bug #481032) + +* Wed Oct 8 2008 Orion Poplawski 1.8.1-3 +- Add sparc64 to 64-bit conditionals + +* Fri Sep 26 2008 Orion Poplawski 1.8.1-2 +- Add patch to filter -little as option used on sh arch (#464052) + +* Thu Jun 5 2008 Orion Poplawski 1.8.1-1 +- Update to 1.8.1 + +* Tue May 27 2008 Orion Poplawski 1.8.1-0.rc1.1 +- Update to 1.8.1-rc1 + +* Tue May 13 2008 Orion Poplawski 1.8.0.snap5-2 +- Use new %%{_fmoddir} macro +- Re-enable ppc64, disable failing tests. Failing tests are for + experimental long double support. + +* Mon May 5 2008 Orion Poplawski 1.8.0.snap5-1 +- Update to 1.8.0-snap5 +- Remove --enable-threadsafe, incompatible with --enable-cxx and + --enable-fortran +- ExcludeArch ppc64 until we can get it to build (bug #445423) + +* Tue Mar 4 2008 Orion Poplawski 1.8.0-2 +- Remove failing test for now + +* Fri Feb 29 2008 Orion Poplawski 1.8.0-1 +- Update to 1.8.0, drop upstreamed patches +- Update signal patch +- Move static libraries into -static sub-package +- Make -devel multiarch (bug #341501) + +* Wed Feb 6 2008 Orion Poplawski 1.6.6-7 +- Add patch to fix strict-aliasing +- Disable production mode to enable debuginfo + +* Tue Feb 5 2008 Orion Poplawski 1.6.6-6 +- Add patch to fix calling free() in H5PropList.cpp + +* Tue Feb 5 2008 Orion Poplawski 1.6.6-5 +- Add patch to support s390 (bug #431510) + +* Mon Jan 7 2008 Orion Poplawski 1.6.6-4 +- Add patches to support sparc (bug #427651) + +* Tue Dec 4 2007 Orion Poplawski 1.6.6-3 +- Rebuild against new openssl + +* Fri Nov 23 2007 Orion Poplawski 1.6.6-2 +- Add patch to build on alpha (bug #396391) + +* Wed Oct 17 2007 Orion Poplawski 1.6.6-1 +- Update to 1.6.6, drop upstreamed patches +- Explicitly set compilers + +* Fri Aug 24 2007 Orion Poplawski 1.6.5-9 +- Update license tag to BSD +- Rebuild for BuildID + +* Wed Aug 8 2007 Orion Poplawski 1.6.5-8 +- Fix memset typo +- Pass mode to open with O_CREAT + +* Mon Feb 12 2007 Orion Poplawski 1.6.5-7 +- New project URL +- Add patch to use POSIX sort key option +- Remove useless and multilib conflicting Makefiles from html docs + (bug #228365) +- Make hdf5-devel own %%{_docdir}/%%{name} + +* Tue Aug 29 2006 Orion Poplawski 1.6.5-6 +- Rebuild for FC6 + +* Wed Mar 15 2006 Orion Poplawski 1.6.5-5 +- Change rpath patch to not need autoconf +- Add patch for libtool on x86_64 +- Fix shared lib permissions + +* Mon Mar 13 2006 Orion Poplawski 1.6.5-4 +- Add patch to avoid HDF setting the compiler flags + +* Mon Feb 13 2006 Orion Poplawski 1.6.5-3 +- Rebuild for gcc/glibc changes + +* Wed Dec 21 2005 Orion Poplawski 1.6.5-2 +- Don't ship h5perf with missing library + +* Wed Dec 21 2005 Orion Poplawski 1.6.5-1 +- Update to 1.6.5 + +* Wed Dec 21 2005 Orion Poplawski 1.6.4-9 +- Rebuild + +* Wed Nov 30 2005 Orion Poplawski 1.6.4-8 +- Package fortran files properly +- Move compiler wrappers to devel + +* Fri Nov 18 2005 Orion Poplawski 1.6.4-7 +- Add patch for fortran compilation on ppc + +* Wed Nov 16 2005 Orion Poplawski 1.6.4-6 +- Bump for new openssl + +* Tue Sep 20 2005 Orion Poplawski 1.6.4-5 +- Enable fortran since the gcc bug is now fixed + +* Tue Jul 05 2005 Orion Poplawski 1.6.4-4 +- Make example scripts executable + +* Wed Jun 29 2005 Orion Poplawski 1.6.4-3 +- Add --enable-threads --with-pthreads to configure +- Add %%check +- Add some %%docs +- Use %%makeinstall +- Add patch to fix test for h5repack +- Add patch to fix h5diff_attr.c + +* Mon Jun 27 2005 Tom "spot" Callaway 1.6.4-2 +- remove szip from spec, since szip license doesn't meet Fedora standards + +* Sun Apr 3 2005 Tom "spot" Callaway 1.6.4-1 +- inital package for Fedora Extras