diff -urN doxygen-1.5.5/src/util.cpp doxygen-1.5.5.brokenpaths/src/util.cpp

--- doxygen-1.5.5/src/util.cpp	2008-01-19 16:54:27.000000000 +0100

+++ doxygen-1.5.5.brokenpaths/src/util.cpp	2008-03-14 16:45:47.000000000 +0100

@@ -4468,7 +4468,7 @@

       QCString pathStripped = stripFromIncludePath(path);

       for (fni.toFirst();(fd=fni.current());++fni)

       {

-        QCString fdStripPath = stripFromIncludePath(fd->getPath());

+        QCString fdStripPath = stripFromIncludePath(fd->getPath().right(path.length()));

         if (path.isEmpty() || fdStripPath==pathStripped) 

         { 

           count++;